PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26254-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 88aa    MW: 9814.88 Da    PI: 5.8301
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26254-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-071762345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W++ E + + +a + +G      W+++a+ mg ++++++++ ++q
  TRIUR3_26254-P1 17 EWSKKENKMFEQALAYYGVSapnLWEKVASAMGGTKSAEEVRCHFQ 62
                     7*****************99**9********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7371065IPR017877Myb-like domain
SMARTSM007176.7E-51467IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-121673IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-41771IPR009057Homeodomain-like
PfamPF002492.3E-61762IPR001005SANT/Myb domain
CDDcd001671.52E-41762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSGSSSRST SPNSDSEWSK KENKMFEQAL AYYGVSAPNL WEKVASAMGG TKSAEEVRCH  60
FQILVDDVNS IEDGRIPFPK YKTQGFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-2018851177RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612038e-81AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639473.19e-37PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB85e-24RADL1_ARATH; Protein RADIALIS-like 1
SwissprotQ6NNN04e-24RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLM7Z8S66e-61M7Z8S6_TRIUA; Uncharacterized protein
STRINGMLOC_53626.22e-44(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-25RAD-like 1